Well, patience.
Anyway, most rabbits hate to be picked up, if you really must do it always give a treat right after the ordeal. I still get bitten and need a thick sweater to not loose blood, but at least they don't hold a grudge. I would not carry them to and fro between a run and cage, but use tunnles (I use big cardboard rolls, and square ones made from wood boards). I use their pellets as treats, before giving them any I always shake the pail, that helps a lot to make them go where I want them to.
Both males, and not neutered yet? That too can contribute to problems, when there are tensions because of puberty going into full swing now and male hormones constantly roaring at them their brains could be quite occupied with that, leaving little space to think about you.
Two males is the most difficult combination, not even talking about intact ones, you'll have to be vigilant for tensions building up when hormones kick in, a fight can damage chances of bonding them permanently, even if you have them neutered later. I guess most would advice to seperate them now, have them neutered, and try to bond them 6 weeks later once hormones faded out. (no guarantee that this works out though). I have no experience with bonding males so better listen to others on thatb topic.
Also, not all rabbits are cuddly, A 6yo doe of mine still very rarely allows me to touch her. Small steps, treats and patience work most times, but be sure you don't have wrong expecations about rabbits.