So you think it does feel better with the cisapride? I've read of some rabbits with ongoing digestive problems, that have had to stay on a gut motility med for life. That isn't the most desirable thing, and if the digestive issues can be sorted with diet changes, that is preferred, but sometimes meds are needed if nothing else works.
Well since those posts are gone.... Your last post about using bermuda hay, I mentioned that it probably should be ok, that sudden changes of grass hay usually don't cause a problem with 'most' rabbits. The only grass hay I've heard of causing problems, is mature oat hay with grain heads in it. But you still might want to start it out slowly for a few days, if you decide to try it, unless you think the hay he's getting now is causing problems, then it would be better to stop that hay and give him another kind.
And here was my other post and the links that I included in case you wanted to take a look at them.
The thing with vets is that they aren't infallible(non of us are). Rabbit vets experience differs, so though they have some medical knowledge of rabbits, it doesn't mean they have all the answers or won't make mistakes in diagnosis and treatment. That's why it's so important to find the best vet possible for our rabbits.
I'm not claiming my suggestions are an answer for Zero's problems. All I'm doing is sharing what I have learned from experience with my own rabbits problems, with what I've read of other's digestive problems with their rabbits, and the different articles that I've read about digestive upset in rabbits. When other health problems have been ruled out as the cause of stasis and digestive difficulty, my personal experience has shown me that the most common cause of digestive problems in rabbits seems to be from carbs and sugars. I had one rabbit die from my inexperience with digestive problems, so I learned all I could, and was able to help Zeus recover when he got stasis. Zeus and Toby are my best examples of sensitivity to carbs and sugars. Every time I tried reintroducing pellets into Zeus' diet, he would start to show signs of his stomach bothering him. Ever since pellets were completely stopped, he hasn't had any more problems. Toby is very sensitive too, but not as much as Zeus. Toby gets a very small amount of pellets each day, about 2 tsp. When I've tried increasing the amount his poops start to change. They'll get spongy, or mushy, or smaller, but he doesn't show signs of discomfort. Both of these boys are my megacolon rabbits, so they are the most sensitive to the food in their diet.
But don't take my word for it. Research and experience. You've seen for yourself, a direct reaction from Zero, to the hydropet. So you know that something in it caused bloating. The salt and minerals wouldn't cause a problem, so it would have to be the sugar or yeast, both carbs. This is how I figured out Zeus had a problem with pellets and critical care. I could see a reaction afterwards, so I knew it was the problem.
I'm not saying this is what you need to do, but this is what I would try if it were my rabbit. Since he is having difficulty coming off of the cisapride, I would keep him on the minimum that he needs for now, and gradually reduce the amount as he is feeling better. And I would feed ONLY timothy hay(with the seed heads removed if necessary). No benebac, no critical care, no electrolytes. Nothing besides the hay and that one med. As long as there was no stasis relapse, I would continue this for a few days to see how it goes. Then if he seems to be doing pretty good, you have your answer. If you see bloating and it is only after having the cisapride, then you know the sugars in it are causing a problem. If he is bloated the whole time, then you may need to go with a more fiberous less rich hay. But this is what I would try with my own rabbits. More hay most often seems to be what helps with digestive problems, that's just what I've found.
There's a vet that sometimes comes on here, that also recommends a non pellet diet, based on his experience with rabbits having problems with them. His user name is Geoff. Reading his past posts may be helpful, and you could try to send him a pm, but it has been a while since I last saw him post on here, so I don't know if you will get a reply very soon.
Here are links with info on digestive problems. I would also encourage looking at peoples personal accounts of digestive problems with their rabbits. They won't all be the same, but you will start to see a trend of most of them being diet related. There's also a UK rabbit forum(RU) that has some good info. You may even be able to post there and get some ideas. Rabbits as pets are a fairly normal thing over there, so the vets and some of the people on the forum, have a good amount of knowledge about health problems with rabbits. I don't know about vets that are rabbit experts here, but I know that Francis Harcourt Brown is considered an expert there. Maybe it would be possible for the new vet that you go to, to consult with her.
http://www.ivis.org/proceedings/scivac/2005/Harcourt4_en.pdf?LA=1
http://www.veterinarypartner.com/Content.plx?P=A&S=0&C=0&A=484#.UZ8FPbx7LTo.twitter
I also found this one on pellet free diets if you want to look into it.
http://www.suevet.com/bunny_health.html