A lot of the kids in my 4-H club have brought in rabbits that have no training and have the typical pet mentality of being able to do whatever they want, when they want.
Our training sessions involve having everyone put their rabbits on a carpet-topped table (bath mat on a dryer works fine). If your rabbit doesn't like being handled, you might have to train it to put up with it. There's two ways of doing this: treating while you're handling the rabbit (if the rabbit REALLY doesn't like being handled, you might have to treat for simply allowing you to pet her--full handed over the back, not just face scratches), and handling firmly. By handling firmly, I mean that when you pick her up, grab her by the nape of the neck (scruff) and gather one or both ears into your grab to control her head (especially if she decides biting is a way to get away). Then, when you lift, scoop up her rump and tuck her head between the scooping arm and your ribs (hidey hole). Then set her down on the table. While on the table, she is not allowed to move. Just keep a firm hand on her shoulders and treat her when she quits moving. If slight contact on the shoulders doesn't work, you may have to pin her until she quits moving, which can be done with one hand very firmly, maybe tucking your finger and thumb behind her elbows to keep her from moving backward; or it can be two hands; or make a V with your first to fingers and slide one finger on each side of her neck with your fingertips on the carpet (not very comfortable for the rabbit, and I only ever use it on particularly uncooperative rabbits).
Once you get the idea to her that being on a table means not getting to move, you can work on training her to sit in a proper position, which depends on what breed she is (or most resembles in the case of a cross).
To keep from stressing the rabbit out too much, only do this a little bit a day, but do it every day. If she struggles quite a bit, just get her to hold still one more time and then call it a day, but don't quit when she's struggling or she'll learn that gets her out of it.