That is blood. I think you need a more experienced rabbit vet for a second opinion. By this point you've had enough testing done that an experienced rabbit vet would have been able to give you a better idea of what's going on(or what definitively isn't), and the proper treatment to correct it.
The fact that your vet didn't even consider the possibility of uterine cancer being a possible cause, or bladder sludge based on your description of your rabbit having pasty urine in the past, makes me doubtful about the vets rabbit knowledge. An experienced rabbit vet really can make all of the difference in the world of getting the proper diagnosis and treatment. Vets with less experience with rabbits, may not have the knowledge base or can miss things that would be obvious to an experienced rabbit vet. If finding a different vet isn't a possibility, there's asking your current vet to consult with a specialist to help get this figured out and the proper diagnosis.
Things that I would do. If a proper urine culture and sensitivity test to determine if and what bacteria were involved, and what antibiotic would be effective wasn't actually done, there would be having that testing done. And a much longer course of the proper rabbit safe antibiotic. One week on antibiotics is never enough to clear up bacterial infections in rabbits. Never anything less than 2 weeks, but 4-6 weeks isn't unusual. Infections in rabbits can be very difficult to clear up, and all a too short of a course of antibiotics does is create antibiotic resistant bacteria. I would also want to be giving daily meloxicam(NSAID) to reduce inflammation.
There's also having a second look at the xrays and scans to verify there's no evidence of sediment and calcium build up in the bladder, no evidence of bladder or kidney stones, and no visible evidence of uterine cancer.
If all scans and xrays were clear of stones and sludge build up, and nothing showing that there's the start of uterine abnormalities, and the urine culture showed no sign of bacteria, then I would say that this could very possibly be crystals in the urine irritating the urinary tract due to your description of seeing pasty urine in the past, in which case a change of diet and removing high oxalic veggies and high calcium foods like the alfalfa pellets, will hopefully be enough to stop the problem. Or the bleeding is linked to the start of uterine problems, in which I would want to have my rabbit spayed to eliminate that risk and hopefully be what resolves the bleeding. Given the choices, I'm leaning towards a uterine abnormality because it's bright red spots of blood and the urine isn't beige/brownish, white/cloudy, or thickened, which is what typically happens with sludge and/or a UTI. And the beginning of uterine problems won't necessarily always show up on xrays/scans, but can still be the cause of bleeding.
https://www.stortvet.com/red-urine/
So that's what I would be looking at doing next to get this resolved. Blood in the urine isn't that complicated to figure out. It's either going to be an infection, growth, or something irritating the urinary tract/kidneys, or it's going to be connected to the uterus.